Pont D et al. (2022) Quantitative monitoring of diverse fish communities on a large scale combining eDNA metabarcoding and qPCR. Molecular Ecology Resources. early online (https://doi.org/10.1111/1755-0998.13715)

Stoeckle BC et al. (2022) A conservation genetics perspective on supportive breeding: A case study of the common nase (Chondrostoma nasus). Aquatic Conservation: Marine and Freshwater Ecosystems. 32: 1596-1605. 

Geist J et al. (2021) Securing genetic integrity in freshwater pearl mussel propagation and captive breeding. Scientific Reports. 11: 16019. 

Nagel C et al. (2021). Going with the flow: Spatio-temporal drift patterns of larval fish in a large alpine river. Freshwater Biology. 66: 1765-1781. 

Belle CC et al. (2021) Taxonomic requirements for better documenting and understanding biological invasions – the example of genetic weatherfish Misgurnus/Paramisgurnus sp. Identification. Bioinvasions Records. 10: 506-520. 

Stoeckle BC et al. (2021). Influence of stream characteristics and population size on downstream transport of freshwater mollusk environmental DNA. Freshwater Science. 40: 191-201. 

Belle CC, Stoeckle BC, Geist J (2019) Taxonomic and geographical representation of freshwater environmental DNA research in aquatic conservation. Aquatic Conservation: Marine and Freshwater Ecosystems 29: 1996-2009.

Stoeckle BC et al. (2019) Molecular confirmation of the large-scale loach Paramisgurnus dabryanus Dabry de Thiersant, 1872 (Cypriniformes, Cobitidae) in Europe. Bioinvasions Records. 8: 419–426.

Marwaha J et al. (2019) Host (Salmo trutta) age influences resistance to infestation by freshwater pearl mussel (Margaritifera margaritifera) glochidia. Parasitology Research. 118: 1519-1532. 

Kuehn R et al. (2018) Identification of a piscine reovirus-related pathogen in proliferative darkening syndrome (PDS) infected brown trout (Salmo trutta fario) using a next-generation technology detection pipeline PLoS ONE 13(10): e0206164. 

Geist J et al. (2018) Genetic structure of Irish freshwater pearl mussels (Margaritifera margaritifera and Margaritifera durrovensis): Validity of subspecies, roles of host fish, and conservation implications. Aquatic Conservation: Marine and Freshwater Ecosystems. 28; 923-933. 

Zanatta DT et al. (2018) High genetic diversity and low differentiation in North American Margaritifera margaritifera (Bivalvia: Unionida: Margaritiferidae). Biological Journal of the Linnean Society. 123; 850–863. 

Nikolov IS et al. (2017) Substantial hybridisation between wild boars (Sus scrofa scrofa) and East Balkan pigs (Sus scrofa f. domestica) in natural environment as a result of semi-wild rearing in Bulgaria. Czech Journal of Animal Science. 62:1-8.

Stoeckle BC et al. (2017) A systematic approach to evaluate the influence of environmental conditions on eDNA detection success in aquatic ecosystems. PLoS ONE 12(12): e0189119.

Belle CC et al. (2017) Genetic species identification in weatherfish and first molecular confirmation of Oriental Weatherfish Misgurnus anguillicaudatus (Cantor, 1842) in Central Europe. Knowledge and Management of Aquatic Ecosystems. 418: 31. 

Stoeckle BC et al. (2017) Strong genetic differentiation and low genetic diversity of the freshwater pearl mussel (Margaritifera margaritifera L.) in the southwestern European distribution range. Conservation Genetics 18: 147-157.

Stoeckle BC, Kuehn R, Geist J (2016) Environmental DNA as a monitoring tool for the endangered freshwater pearl mussel (Margaritifera margaritifera L.): a substitute for classical monitoring approaches? Aquatic Conservation: Marine and Freshwater Ecosystems 26: 1120–1129.

Hartmann J et al. (2016) Establishing mussel behavior as a biomarker in ecotoxicology. Aquatic Toxicology 170: 279-288.

Stoeckle BC et al. (2014) Identification of 10 polymorphic microsatellite loci in the high montane gastropod Semilimax kotulae using high-throughput sequence data. Molluscan Research. 34: 20-24.

Stoeckle BC et al. (2013) Microsatellites for North American species of Triops (Branchiopoda: Notostraca). Journal of Crustacean Biology. 33: 48-55.

Stoeckle BC et al. (2011) Identification of polymorphic microsatellite loci for the endangered Kagu (Rhynochetos jubatus) by high-throughput sequencing. Journal of Ornithology.153: 249-53.

Stoeckle BC and Kuehn R (2011) Identification of 18 polymorphic microsatellite loci in the spruce bark beetle Ips typographus L. (Coleoptera: Scolytidae) using high-throughput sequence data. European Journal of Entomology 108: 169-171.

Stoeckle BC et al. (2010) Influence of arthropod sampling solutions on insect genotyping reliability. Entomologia Experimentalis et Applicata135: 217-223.